Sarsani V, Aldikacti B, He S, Zeinert R, Chien P, Flaherty P "Model-based identification of conditionally-essential genes from transposon-insertion sequencing data" PLOS Computational Biology 18(3) Mar 2022 doi: 10.1371/journal.pcbi.1009273.
He S, Schein A, Sarsani V, and Flaherty P "A Bayesian Nonparametric Model for Inferring Subclonal Populations from Structured DNA Sequencing Data" Annals of Applied Statistics 15(2) Jun 2021 doi: 10.1214/20-aoas1434.
Flaherty P and Davis RW. "Robust Optimization of Biological Protocols" Technometrics 57(2) July 13, 2015 doi: 10.1080/00401706.2014.915890
Flaherty P, Natsoulis G, Muralidharan O, Winters M, Buenrostro J, Bell J, Brown S, Holodniy M, Zhang N, Ji HP. "Ultrasensitive detection of rare mutations using next-generation targeted resequencing" Nucleic Acids Research 40(1) Jan. 1, 2012 doi: 10.1093/nar/gkr861
Flaherty P, Radhakrishnan M, Dinh, T, Jordan MI, Arkin AP. "A Dual Receptor Cross-talk Model of G protein-coupled Signal Transduction in RAW Macrophage Cells" PLOS Computational Biology 4(9) Sept. 26, 2008 doi: 10.1371/journal.pcbi.1000185
Flaherty P, Jordan MI, Arkin AP. "Robust Design of Biological Experiments" Proceedings of Neural Information Processing Systems (NIPS) 1(0) Jan. 1, 2005
Giaever G, Flaherty P, Kumm J, Proctor M, Nislow C, Jaramillo DF, Chu AM, Jordan MI, Arkin AP, Davis RW. "Chemogenomic profiling: Identifying the functional interactions of small molecules in yeast" Proc. Natl. Acad. Sci. USA 101(3) Jan. 20, 2004
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Department of Mathematics and Statistics