Y Hu, N Mohammad Mirzaei, L Shahriyari, Bio-Mechanical Model of Osteosarcoma Tumor Microenvironment: A Porous Media Approach, *Cancers*, 2022.

Stahlberg EA, Abdel-Rahman M, Aguilar B, Asadpoure A, Beckman RA, Borkon LL, Bryan JN, Cebulla CM, Chang YH, Chatterjee A, Deng J, Dolatshahi S, Gevaert O, Greenspan EJ, Hao W, Hernandez-Boussard T, Jackson PR, Kuijjer M, Lee A, Macklin P, Madhavan S, McCoy MD, Mohammad Mirzaei N, Razzaghi T, Rocha HL, Shahriyari L, Shmulevich I, Stover DG, Sun Y, Syeda-Mahmood T, Wang J, Wang Q and Zervantonakis I, Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation, *Front. Digit. Health*, 2022.

D. Sofia, N. Mohammad Mirzaei, L. Shahriyari, Patient-Specific Mathematical Model of the Clear Cell Renal Cell Carcinoma Microenvironment, *Journal of Personalized Medicine*, 2022.

N. Mohammad Mirzaei, Z. Tatarova, W. Hao, N. Changizi, A. Asadpoure, Y. Hu, I.K. Zervantonakis, Y.H. Chang, L. Shahriyari, A PDE model of breast tumor progression in MMTV-PyMT mice, *Journal of Personalized Medicine*, 2022.

R.A. Aronow, S. Akbarinejad, T. Le, S. Su, L. Shahriyari, TumorDecon: A digital cytometry software, *SoftwareX*, 2022.

N. Mohammad Mirzaei, N. Changizi, A. Asadpoure, S. Su, D. Sofia, Z. Tatarova, I.K. Zervantonakis, Y.H. Chang, L. Shahriyari, Investigating key cell types and molecules dynamics in PyMT mice model of breast cancer through a mathematical model, *PLoS Computational Biology*, 2022.

N. Mohammad Mirzaei, S. Su, D. Sofia, M. Hegarty, M.H. Abdel-Rahman, A. Asadpoure, C. Cebulla, Y.H. Chang, W. Hao, P.R. Jackson, A.V. Lee, D.G. Stover, Z. Tatarova, I.K. Zervantonakis, L. Shahriyari, A Mathematical Model of Breast Tumor Progression Based on Immune Infiltration,* Journal of Personalized Medicine*, 2021.

T. Le, S. Su, L. Shahriyari, Investigating optimal chemotherapy options for osteosarcoma patients through a mathematical model, *Cells*, 2021.

A. Budithi, S. Su, A. Kirshtein, L. Shahriyari, Data driven mathematical model of FOLFIRI treatment for colon cancer, *Cancers*, 2021.

T. Le, S. Su, A. Kirshtein, L. Shahriyari, Data driven mathematical model of osteosarcoma, *Cancers*, 2021.

S.Su, S. Akbarinejad, L. Shahriyari, Immune Classification of Clear Cell Renal Cell Carcinoma, *Scientific Reports*, 2021.

A. Kirshtein, S. Akbarinejad, W. Hao, T. Le, S. Su, R. Aronow, L. Shahriyari, Data driven mathematical model of colon cancer progression, *Journal of Clinical Medicine*, 2020.

T. Le, R. Aronow, A. Kirshtein, L. Shahriyari, A review of digital cytometry methods: estimating the relative abundance of cell types in a bulk of cells, *Briefing in Bioinformatics*, 2020.

## Department of Mathematics and Statistics