Eric Martz, Ph.D.
Principal author of FirstGlance in Jmol and Protein Explorer; Proteopedia development team member.
Professor Emeritus, University of Massachusetts, Amherst -- firstname.lastname@example.org
for hosting my visit to Israel.
|Get Started Individually At Proteopedia|
|Proteopedia.Org (Part I)|
Finding published molecules of interest
Each participant should find a molecule of personal interest.
Overview of Popular Molecular Visualization Software
Quick comparisons with other programs you've heard about.
We'll skip this section. It is here for reference.
Review of Protein Chemistry and Structure.
We'll do this quickly. The links are for participants who are educators.
|Evolutionary Conservation: ConSurf|
|Major histocompatibility protein (MHC I 2VAA): evolutionary conservation and variability from ConSurf. More..|
|FirstGlance in Jmol: A Simple Viewer for Any Macromolecule|
Contacts: Anti-Alzheimer's drug analog (*) interaction with acetylcholinesterase (Dvir et al./Sussman, 2002).
Introduction to Structural Bioinformatics and Genomics
Educators: You are welcome to use the slides linked below, or to adapt content from them into your own slides.
|Proteopedia.Org (Part II): Authoring|
|Animated Powerpoint Slides and Publication-Quality Images: Polyview-3D|
|PowerPoint-Ready Animation from Polyview-3D. Click on the image for a larger view and explanation.|
|Membranes, Model Quality, etc.|
|Potassium channel (1R3J) showing membrane surface planes (from OPM).|
|Jmol in Scientific Journals:|
|If this image is not moving, reload the page!|
|Morph of the lactose repressor bending DNA as it recognizes the operon. More..|
|Molecular Modeling (Time Permitting, or Later Private Sessions)|