Protein Structure Servers
- The World Wide Protein Data Bank
access to all published, empirical macromolecular 3D structure data.
Examples of Derived Databases
All PDB entries in Jmol.
Ligands and sites. A wiki with scene-authoring tools.
- Evolutionarily conserved patches on protein surfaces
Probable quaternary structure:
Specific oligomer/biological assembly coordinates/prediction
- Discovering similar structures
without reference to sequences
- Model quality by atomic contact analysis
after adding all hydrogen atoms
- Structure prediction
by comparative modeling from sequence alignments,
or threading-based models
(Structure Prediction Meta-Server).
and many, many more not listed here.
Eric Martz, University of Massachusetts, October 2004. This page updated April 2012.