To see the cavity:
- Display the Tetramer in Beta FirstGlance in Jmol.
- Click on "Jmol" (lower right below molecule), then click Console.
- Copy the script below, paste it into the bottom box of Jmol's console,
and press Enter.
slab off
spin off
isosurface delete
restrict none
refresh
reset
select :a and ligand
center selected
rotate z 104.77
rotate y 47.49
rotate z 50.6
zoom 440
restrict :a
rotationRadius = 84.39
spacefill
color atoms chain
color atoms translucent -1
select :a and ligand
spacefill off
wireframe 0.5
color atoms opaque
color cpk
select :a and gln136
color atoms opaque
select :a
isosurface minset 250 POCKET cavity 1.2 5
console off