The University of Massachusetts Amherst
 
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Barry Goodell

Professor

 Our laboratory conducts research on fungal and bacterial systems, and on the biochemical mechanisms these organisms use to cause oxidation in substrates. Our current research includes: 1) study of fungal disease caused by Cryptococcus spp. in mammalian brain, 2) understanding the mechanisms that fungi use to convert biomass to bio-based products and fuels, 3) examining the role of bacterial symbionts in the gills of marine mollusks that bore into and digest wood. Although these are seemingly very diverse research areas, the groups of fungi and bacteria that we work with employ unique, and very interesting, redox-cycling chemistries that allow these organisms to cause damage and/or initiate pathogenesis. These mechanisms are the focus of our lab, in-part because they are little studied by other researchers, yet these mechanisms have been shown to cause significant oxidative pathology/damage. For example, fungi that use non-enzymatic chemistries to attack woody biomass cause approximately 80% of decay that occurs in forests in the northern hemisphere. We use biomimicry in the lab to better understand the biochemical mechanisms that the fungi use and how we can modify this chemistry for conversion processes to make bio-based products and biofuels. Biomimicry also allows us to better understand how Cryptococcus generates oxygen radicals in brain tissue and initiates pathogenesis resulting in more than 180,000 human deaths each year. Ultimately, this later research may open doors to how related redox-cycling chemistries may promote neurodegenerative disease when these chemistries are triggered in specific organelles, or in mass lesions in the brain. 

Current Research

Biomedical Research: Fungal Pathogenesis
In our lab we study a fungal organism that is an important human pathogen, but that evolved from fungi that inhabit forest niches and that decay wood. Cryptococcus neoformans evolved in ways currently not well understood, to attack the brain and other organs of mammals and other animals by generating oxygen radicals to damage tissue. After invading the lungs of a host, the fungus can move to the brain, and it thrives in the low pH of lysosomes of cells to cause Cryptococcal meningitis; a disease which kills 181,000 people each year. A key focus in this research is exploring whether the “CMF mechanisms”, known to be active in certain brown rot wood decay fungi (see Bioconversion Research below on this page) also play a role in pathogenesis.

 

Environmental Microbiology: Bioconversion Research
Fungal biodegradation: In biomass deconstruction (bioconversion) research, enzymes are typically used to depolymerize the components of biomass. However, enzymes are too large to penetrate the intact structure of plant/wood cell walls so they are very inefficient in degrading wood. In nature, some fungi known as the "brown rot" fungi have developed a low molecular weight system to generate oxygen radicals that can rapidly penetrate, and then deconstruct, plant cell walls. The low molecular weight system known as the "chelator-mediated Fenton" (CMF) system rapidly depolymerizes the two basic building blocks of wood; cellulose (holocellulose) and lignin. The model brown rot organism that we have used for much of our research, Gloeophyllum trabeum, uses the CMF mechanism, and in our lab we are trying to better understand the chemistry that underpins this mechanism.

Environmental Microbiology: Symbiosis between gill-inhabiting bacteria and marine mollusks

Marine mollusks known as shipworms are the principle degraders of wood in marine environments and they play a critical role in carbon cycling, biodegradation and niche creation in these ecosystems. It is estimated that 70% of the woody biomass from mangrove forests are digested by these animals. However, how that digestion occurs in not well known. Shipworms possess symbiont bacteria, but unlike gut-inhabiting symbionts that are known in other animals, these bacterial symbionts inhabit the shipworm’s gills. We hypothesize and have preliminary data suggesting that some of the unique metabolites secreted by these symbionts participate in a CMF mechanism (see above under Bioconversion Research) that promotes the digestion of wood in the gut of the shipworm. Uncovering more about this mechanism is crucial to our understanding of energy flow and carbon cycling from terrestrial to both freshwater and marine systems.

Learn more at: https://barrygoodell.wixsite.com/goodelllab

View all publications at: https://scholar.google.com/citations?hl=en&user=BD1FWWIAAAAJ&view_op=list_works&sortby=pubdate 

Academic Background

Professor, Microbiology Department, University of Massachusetts. Amherst, MA. 2017-current.
Professor, Department of Sustainable Biomaterials. Virginia Tech, Blacksburg, VA. 2012-2017: 
Professor and Head, Department of Sustainable Biomaterials. Blacksburg, VA. 2010-2012.  
Asst. Prof, Assoc. Prof, Professor , Wood Science and Technology/Forest Products Laboratory, University of Maine, Orono, (1983-2010). 

Ph.D – 1983: Wood Science (Wood Science and Engineering), Oregon State University. Minors: Biochemistry/Biophysics; Plant Pathology
M.S – 1980: Wood Science (Wood Science and Engineering), Oregon State University. 
B.S – 1976: University of New Hampshire. 

For a complete list of Professor Goodell's current publications, please see: https://scholar.google.com/citations?hl=en&user=BD1FWWIAAAAJ&view_op=list_works&sortby=pubdate
OA Hegnar, B Goodell, C Felby, L Johansson, N Labbé, K Kim, ..., Challenges and opportunities in mimicking non-enzymatic brown-rot decay mechanisms for pretreatment of Norway spruce, Wood Science and Technology 53 (2), 291-3111(2019).
Y Tamaru, M Yoshida, LD Eltis, B Goodell. Multiple iron reduction by methoxylated phenolic lignin structures and the generation of reactive oxygen species. International Journal of Biological Macromolecules 128, 340-346. 2019
NK Prosper, S Zhang, H Wu, S Yang, S Li, F Sun, B Goodell.Enzymatic biocatalysis of bamboo chemical constituents to impart antimold properties. Wood science and technology 52 (3), 619-635(2018)
. B Goodell, Y Zhu, S Kim, K Kafle, D Eastwood, G Daniel, J Jellison,Modification of the nanostructure of lignocellulose cell walls via a non-enzymatic lignocellulose deconstruction system in brown rot wood-decay fungi ... Biotechnology for biofuels 10 (1), 179,16. 2017
. GC Birkett, S Sicoli, L Horvath, J Foster, YT Kim, S Renneckar, B Goodell.Investigation of nanofibrillated cellulose for hydrophobic packaging material: Examining alternatives to solvent exchange and lyophilization. BioResources 12 (2), 4314-4326(2017).
D Derrien, H Bédu, M Buée, A Kohler, B Goodell, E Gelhaye.Energy balance associated with the degradation of lignocellulosic material by white-rot and brown-rot fungi. EGU General Assembly Conference Abstracts 19, 6732(2017)
 
Contact Info

Microbiology
313 Stockbridge/220 Morrill
80 Campus Center Way/627 N Pleasant ST
Amherst, MA 01003-9292

bgoodell@umass.edu

www.micro.umass.edu/faculty-and-research/barry-goodell