Life
Sciences at the University of Massachusetts Amherst
Departments:
- Biochemistry & Molecular Biology
- Biology
- Chemical Engineering
- Chemistry
- Computer Science
- Entomology
- Exercise Science
- Food Science
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- Geosciences
- Microbiology
- Nutrition
- Physics
- Plant & Soil Science
- Polymer Science & Engineering
- Psychology
- Veterinary & Animal Science
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Campus Research Strengths:
- Biodiversity and Evolution: Comparative and Functional Genomics
- Chemistry-Biology Interface: Understanding and Engineering Biological
Systems
- Infection and Immunity
- Life and Death of Cells: Neurodevelopment and Neurodegeneration
- Neuroendocrinology
- Cellular Complexity and Self-Organization
- Muscles, Tendons and Ligaments
- Life and Death of Proteins in Cells
- Reproduction
Technological Capablilties:
- Expression Arrays
- Real-time PCR
- Mass Spectrometry
- High-field NMR
- Solid-state NMR
- Macromolecular Crystallography
- DNA Sequencing
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- Computer Modeling of Complex Systems
- Bioinformatics
- Electron and Confocal Microscopy
- Evolutionary Genomics
- Protein Mutagenesis/Expression/Folding
- Biomaterials/Tissue Engineering
- Model Organisms
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Research Expenditures:
Life sciences research expenditures at UMass Amherst 2001 (most recent
data available) were $29.9 million, representing over 30% of all campus
research expenditures.
Technology Transfer:
Twenty disclosed technologies or patents in the life sciences area available
for licensing.
Partnerships:
Baystate Medical Center -UMass Amherst Biomedical Research Institute,
Springfield, MA
Centers and Institutes:
Key Life Science Research Programs
at
UMass Amherst
Biodiversity and Evolution: Comparative and Functional Genomics
The rapid development of the tools of molecular biology over the past
several years has led to a vast amount of sequence. Research in the life
sciences has moved beyond understanding the functions of individual genes,
proteins and other small biological molecules to understanding how all
of these molecules interact within cells and organisms. Functional genomics
and comparative genomics are complementary activities that use an integration
of experimental approaches and information technologies including bioinformatics
to mine fundamental discoveries from genomic data. The ultimate goal is
to gain new insights into the genetics and physiology of individual organisms
and groups of organisms while deepening our understanding of the evolutionary
relationships among organisms.
• Dr. Derek Lovley (Microbiology) has obtained over $23 million
in external research funds since 1995 for the Geobacter Project. A major
research focus in the Lovley lab is the genome-enabled investigation
of the physiology of microorganisms involved in the anaerobic bioremediation
of metal and organic contaminants. Geobacter species are being studied
intensively in order to optimize practical applications such as the
bioremediation of radioactive metals and harvesting electricity from
waste organic matter. Other organisms with application to bioremediation
and energy harvesting are being examined in a similar manner. These
include the organism NaphS2, which serves as a model for the anaerobic
degradation of polycyclic aromatic hydrocarbons in marine sediments
and Rhodoferax ferrireducens, which is capable of effectively converting
sugars to electricity in novel microbial fuel cells.
• UMass researchers led by Richard Yuretich (GeoSciences) have
received $1.6 million from the Biocomplexity in the Environment Program
of the National Science Foundation.
The Chemistry-Biology Interface: Understanding and Engineering
Biological Systems
Powerful tools and techniques of chemistry have increasingly opened doors
to discovery in the biological sciences. Some UMass Amherst investigators
use chemistry to dissect molecular interactions and pathways critical
to cell function, while others are developing new therapeutic strategies
and designing mimics of biological tissue.
• Vincent Rotello and Craig Martin (Chemistry) and Joe Jerry
(Veterinary & Animal Science) are using chemical methods to design
'magic bullets' that selectively destroy breast cancer cells. In their
NIH-supported research, surface-modified gold nanoparticles are targeted
to the cancer cells, where they are internalized. Subsequently, the
cells are killed either by microwave radiation or by toxic substances
brought in by the nanoparticles.
• Lila Gierasch, Danny Schnell and Dan Hebert (Biochemistry and
Molecular Biology), Lynmarie Thompson and Bob Weis (Chemistry), and
Murugappan Muthukumar (Polymer Science & Engineering) use powerful
chemical methods to explore the mechanisms of molecular movement and
signal transmission across cellular membranes. Their research projects
provide insight into regulation of cellular function by hormones and
other signaling molecules, assembly of viruses in the cell, and functional
defects in secretion leading to diseases such as albinism.
• Controlled expression of the genetic information encoded in
cellular DNA lies at the heart of all biological processes. Robert Zimmermann,
Skip Fournier, and Karsten Theis (Biochemistry & Molecular Biology)
and Craig Martin (Chemistry) apply a wide variety of chemical approaches
to explore the molecular machines involved in gene expression at atomic
resolution. Understanding gene expression is essential to the development
of treatments for viral infections, cancer, and many other disease states,
and also contributes tools widely used in the biotechnology industry.
• Susan Roberts, Surita Bhatia, and Henning Winter (Chemical Engineering)
and Maria Santore and Greg Tew (Polymer Science and Engineering) are
using novel synthetic techniques to design polymeric materials that
are tailored for specific biomedical applications. These researchers
are developing nano- to micro- structured materials to encapsulate liver,
thyroid, and islet cells for in vivo treatment of endocrine disorders
and liver disease; polymers with properties similar to antimicrobial
proteins; and highly elastic biocompatible gels with mechanical properties
that mimic those of soft tissue.
Infection and Immunity
Organized societies protect their members against disease causing organisms
through stringent public health measures including vaccination. However,
even vigilant and well-prepared societies are vulnerable to the deliberate
dissemination of highly virulent pathogens and to the emergence of novel
pathogens for which no diagnostic tests and treatments are available.
These new threats need to be countered by the development of effective
and broadly-specific defenses against infectious agents. To encourage
the scientific community to respond to this need, NIH supports research
on “microbial biology and host responses to microbes; the development
of new vaccines, therapies, and diagnostic tools; and the development
of research resources such as appropriate laboratory facilities”.
The UMass Amherst “Infection and Immunity” group, an interdepartmental
body that focuses on human and animal infectious diseases including those
targeted by the NIH, is working directly in this field.
• John Clark (Entomology) engineers pathogen-resistant vectors,
specifically targeting the mosquito vector (Aedes aegypti) of dengue
and dengue hemorrhagic fever viruses and head lice, which are vectors
of epidemic typhus (Rickettia prowazekii).
• Cynthia Baldwin (Veterinary & Animal Science) evaluates
mechanisms of host control of infectious disease organisms, specifically
Brucella abortus, by identifying pathogen genes involved in virulence
and host genes involved in response to those virulence factors.
• Lloyd Semprevivo (Veterinary & Animal Science), working
with Intervet International, is developing vaccines and novel vaccine
delivery systems against pathogenic viruses (human and simian immunodeficiency
viruses), bacteria (Chlamydia) and parasitic worms (Fasciola hepatica).
• Barbara Osborne and Richard Goldsby (Veterinary & Animal
Science) are developing therapeutics in vertebrate and invertebrate
animal bioreactors, specifically large scale production of human immunoglobulins
for passive transfer of protection against pathogens and toxins.
• Samuel Black (Veterinary & Animal Science) is developing
immunostimulatory drones, ie., “stealth” liposomes that
target inflammatory sites and enhance immune responses at those sites.
Life and Death of Cells: Neurodevelopment and Neurodegeneration
The nervous system is the most complex of all tissues, and until recently,
it was assumed that treating neurological diseases resulting from developmental
defects, injury or environmental influences was beyond the realm of practical
science. Recent advances in cellular and molecular biology have changed
this perspective. A highly integrated research team at UMass is providing
key insights into how nervous systems develop, how specific pathways become
damaged during disease, and how neural damage may be repaired. This group
also includes several members who study damage and death of cells in muscle
and the immune system in both animal models and humans. This research
cluster works with the Baystate-UMass Biomedical Research Institute in
Springfield to study degenerative disorders of nerve and muscle.
• Tom Zoeller (Biology) changed the field of developmental neurobiology
with his demonstration that maternal thyroid hormone has profound effects
on the development of the fetal nervous system. His recent work showing
that environmental PCBs interfere with this process has profound implications
for human health.
• Priscilla Clarkson (Exercise Science) is examining changes in
gene expression in human muscle following injury and spinal cord injury
to help define the molecular pathways that mediate muscle wasting. The
proteins encoded by these genes may provide novel targets for therapeutic
intervention.
• Larry Schwartz (Biology) was the first person to clone death-associated
genes. The identification of these genes has provided new insights into
degenerative disorders like Parkinson’s Disease as well as provide
molecular tools for enhancing the survival of transplanted cells.
• Rolf Karlstrom (Biology) has used the power of zebrafish development
to define critical events in the development of the nervous system.
In collaboration with Baystate Medical Center clinicians, he is determining
if mutations in these same genes are responsible for human birth defects.
• Geert Devries (Psychology) has demonstrated that hormones control
the survival of specific neurons in males that regulate aggressive behavior.
Neuroendocrinology
Neuroendocrinologists study interactions between hormones and the brain.
Hormones are an essential part of body-brain communication throughout
life. Early in life, hormones guide normal brain development, orchestrate
its sexual differentiation, and define stress responsiveness. In adulthood,
hormones control processes such as reproduction, learning and memory,
and eating and drinking. Hormonal dysfunction has been linked to a host
of neurological and behavioral disorders, such as postpartum depression,
premenstrual syndrome, and the progress of neuronal degenerative diseases
such as Alzheimer. Finally, many environmental constituents such as industrial
pollutants disrupt hormone-brain interactions, thereby causing, for example,
mental retardation, fertility problems, and cancer. UMass Amherst has
built an unusually strong cluster of neuroendocrinologists, centered around
a prestigious NIH-funded Training Program. The following is a sampling
of NIH-funded research activities of this cluster.
• Deborah Good (Veterinary and Animal Sciences) has discovered
novel genes related to obesity. Deletion of these genes in mice generates
animals that are grossly overweight. As so far only a handful of genes
have been linked to obesity, Good’s research provides important
new insights in factors controlling body weight. Good collaborates with
George Wade (Psychology), who studies the role of neuropeptides in maintaining
the balance between food intake and fertility. His research helps understand
fertility problems in athletes as well as in people with eating disorders.
Good’s expertise in molecular neuroscience and Wade’s in
behavioral neuroscience complement each other and provide powerful new
approaches to their respective research lines.
• Nancy Forger (Psychology) studies a sexually dimorphic system
in the spinal cord of rats and mice in which cell death can be manipulated
with gonadal hormones. During development the brain and spinal cord
produces an abundance of motor neurons that innervate skeletal muscles,
many of which will die in a naturally occurring process called programmed
cell death. Although experiments with cells grown in culture suggest
that growth factors are essential for motor neuron survival, it has
been remarkably difficult to identify such factors in vivo. Using the
process of sexual differentiaion, Forger has identifed growth factors
and growth factor receptors necessary for survival of motoneurons. Her
method provides a powerful strategy to study motorneuron cell death
under physiological circumstances, which eventually should help to understand,
and find cures for, muscular dystrophies.
• Forger collaborates with Geert De Vries (Psychology), who was
the first to demonstrate a sex difference in the anatomy of neurotransmitter
systems in the brain. Recently he demonstrated that such differences
do not only cause differences in behavior, but prevent them as well.
In the latter case these differences compensate for physiological and
hormonal sex differences. Therefore, many behaviors that do not differ
between males and females actually have sexually dimorphic neurochemical
underpinnings. Such sex differences beg the development of sex-appropriate
medication in neurological and behavioral disorders caused by imbalances
of neurotransmitter systems.
• Tom Zoeller (Biology), Sandra Petersen (Biology), and Jeff Blaustein
(Psychology) are mapping genes targeted by environmental constituents
such as industrial pollutants polychlorinated biphenyls (PCBs) and compounds
occurring naturally in food that act like hormones or disrupt hormone
action. For example, Zoeller has demonstrated that genes targeted by
thyroid hormone are also targeted by PCBs. As these genes are important
for normal development of the cerebral cortex, his research explains
how thyroid hormone guides normal development of the cortex as well
as how PCBs can disrupt it. This type of research, therefore, helps
explain the nature of the neurological damage done in people exposed
to high levels of those compounds and may help prevent future harm done
by such compounds.
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