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Fungal Comparative Genomics Lab
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Pathogen-host interactions
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Database
Genebanks:
sequence databases at the National Center for Biotechnology Information (NCBI).
Fungal Genome Initiative (FGI):
fungal genomes generated at the Broad Institute.
Genomic Encyclopedia of Fungi:
fungal genomes generated at Joint Genome Institute.
The Comprehensive Microbial Resource:
fungal genomes generated at J. Craig Venter Institute.
Ensembl:
eukaryotic genomes at EMBL-EBI and the Sanger Institute.
GOLD:
genomes online database.
EU PathDB:
genomes of selected eukaryotic pathogens.
FungiDB:
selected fungal genomes.
Fungal
Transcription Factors,
Secreted Proteins,
and
Cytochrome P450
databases at Seoul National University.
Tools
BLAST
Clustalw
LAGAN
EMBOSS Toolkit
MUMmer 3
ExPASy - Tools
Manatee
Genepattern
SyntenyMiner
Repeat Mask
Repeat Scout
Tandem Repeat Finder
Syntenyminer
Blast2go
Pfam2go
CAZY
SignalP
TargetP
Proteases
PFAM
InterPro
TIGRFAM
OrthoMCL
SMURF
Programming
GMOD Bioinformatics
Bioconductor
BioPerl
Bioinformatics.org
CLC Genomics Workbench
Galaxy
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